weight & body fat
nutrition
PER2

A Biological Clock Gene Linked to Weight (PER2)

Written by Biljana Novkovic, PhD on June 15th, 2020
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The PER2 gene is a key component of the biological clock. It affects a multitude of things in the human body, including the way we store fat, and how we behave towards food. Read on to learn more about PER2 and its effect on body weight.

What Does PER2 Do?

PER2, short for PERIOD2, is a core component of the biological clock. It is one of the main genes responsible for human daily rhythms, also known as circadian rhythms [R, R, R].

A lot of what happens in the body follows a daily rhythm, so it’s not surprising that PER2 has many and varied roles. To name a few, mutations in this gene have been linked to:

  • Being either a morning lark or a night owl [R, R, R, R, R]
  • Advanced sleep phase syndrome, an inherited abnormal sleep pattern where people are sleepy early in the evening and wake up very early in the morning [R, R, R]
  • Melatonin levels [R]
  • Depression, bipolar disorder, seasonal variations in mood, and winter depression [R, R, R, R]
  • Insomnia [R]
  • Reward circuitry and dopamine levels in the brain [R, R]
  • Body weight [R, R]
  • Fasting blood glucose, cholesterol levels, and metabolic syndrome [R, R, R, R]

In this article, we will focus on PER2‘s role in dieting and weight gain. We’ll also try to understand how PER2 influences body weight.

PER2 gene is one of the main components of the biological clock. This means it’s responsible for our daily rhythms. Mutations in PER2 have been linked to being a morning or an evening person, melatonin and dopamine levels, depression, insomnia, body weight, and metabolic syndrome.

A PER2 Variant and Unhealthy Eating Habits

When scientists put 454 overweight and obese Spanish people on a Mediterranean diet, they found several interesting things. One of them was that the PER2 gene was associated with abdominal obesity, or in lay terms — belly fat. They also found that people who were carrying the minor C allele for the rs2304672 SNP in the PER2 gene were more likely to [R]:

  • Drop out from the diet/study 
  • Experience stress when dieting
  • Be extreme snackers
  • Eat when bored 
  • Skip breakfast

These issues and habits are likely to affect not only short-term weight-loss but may also interfere with keeping the weight off long-term [R].

For example, a large study with almost 35k people found that two of the habits above, constant snacking and skipping breakfast, were highly associated with obesity [R].

A SNP in the PER2 gene has been associated with the likelihood of dropping out from a diet intervention, being stressed when dieting, extreme snacking, eating when bored, and skipping breakfast.

How It Works

In a human study with 8 morbidly obese men, lower expression of PER2 in fat tissue has been associated with larger waist circumference [R]. But based on this study alone, we can’t conclude if low PER2 is causing obesity, because it’s also possible that certain diet, lifestyle, or metabolic parameters are decreasing PER2.

That’s where animal studies come to the rescue. Scientists found that mice that lack the PER2 gene develop the so-called “night eating syndrome“, which combines features of a circadian rhythm disorder and an eating disorder. On a high-fat diet, these mice eat as much during their rest period as they do during their active period and that’s how they become obese [R].

There are two main mechanisms in which PER2 seems to affect body weight:

  • Directly, by altering insulin, glucose, and fat metabolism. PER2 may work by blocking PPARγ, a gene that’s responsible for storing fat [R, R]
  • Indirectly, by altering dopamine levels and thereby food-seeking behavior [R]

In the case of the rs2304672 SNP and dieting, a dopamine-related indirect effect is the more likely culprit.

PER2 may affect body weight directly, by blocking fat storage, or indirectly, by altering dopamine levels and food-seeking behavior. 

Your PER2 Results for Obesity and Food Intake

SNP Table

variant genotype frequency risk allele
rs2304672

 

PER2 rs2304672:

  • ‘GG’ =  people with this genotype are more likely to (1) stay in a diet program and (2) have healthier eating behaviors — they are less likely to eat when bored and more likely to eat breakfast [R].
  • ‘CG’ = people with this genotype are more likely to (1) drop out from a diet program, (2) get stressed when dieting, (3) develop unhealthy eating behaviors, such as extreme snacking, eating when bored, and skipping breakfast [R].
  • ‘CC’ = people with this genotype are more likely to (1) drop out from a diet program, (2) get stressed when dieting, (3) develop unhealthy eating behaviors, such as extreme snacking, eating when bored, and skipping breakfast [R].

The majority of the population has the ‘GG’ genotype. About 17% of people carry the ‘C’ allele, while less than 1% have the full ‘CC’ genotype. 

 

Recommendations

Lifestyle

Take Care of Your Biological Clock (Circadian Rhythm)

A study that looked at brain function in 90 adolescents, found that those with the ‘C’ variant of rs2304672 who went to sleep later had reduced activity in the reward circuitry of the brain [R]. This means they may tend to favor short-term “rewarding” activities late in the day, such as browsing social media before going to bed or snacking.

To counteract this, you should take care of your biological clock by going to sleep earlier, at roughly the same time every day, and getting enough sleep on a daily basis. Avoid any distractions before going to bed that can potentially disrupt your daily rhythm.

Researchers over the past few decades have recognized the importance of circadian biology in obesity. It turns out that circadian biology may have a massive influence on energy balance and metabolism [R].

Both shift work and being exposed to bright light at night have been linked to an increased risk of obesity [R, R].

What’s the best way to shirt your biological clock?

Start by going outside in the morning [R, R]. A study in 54 people found that getting exposed to lots of light earlier in the day was associated with a lower BMI [R].

There are several other ways to improve and shift your circadian rhythm, including:

  • eating earlier in the morning and restricting food at night
  • getting more sunlight during the day [R, R, R, R]
  • avoiding bright light at night and wearing blue blocking glasses at night [R, R, R
  • going to bed and waking up at the same time [R]

You can find more information about resetting your circadian rhythm here.

The carriers of the ‘C’ allele may be more prone to engage in short-term “rewarding” activities that disrupt their circadian rhythm and their body weight, such as browsing social media before going to bed or snacking. Taking care of your biological clock is a good approach to weight loss, and it may counteract the effects of harmful variants in the PER2 gene.

Adopt Healthier Eating Behaviors

Carriers of the ‘C’ allele who are overweight may benefit from changing their behavior, by [R]: 

  • Avoiding snacking
  • Avoiding being around food when bored

Eat More Calories Earlier in the Day

The ‘C’ allele of rs2304672 has been associated with skipping breakfast [R].

Getting more calories in the morning has been linked to lower odds of being overweight or obese. On the other hand, eating more during nighttime increased those odds. Plus, eating later in the day was associated with losing less weight when dieting [R, R, R].

In animal studies, mice who ate at the wrong time gained more weight, despite having the same calorie intake and activity over the course of the experiment [R].

However, you need to be careful with adding breakfast to your routine. A large meta-analysis suggests that eating breakfast regularly only helps weight loss as a part of an overall healthier and more active lifestyle. If you don’t make changes to your other meals, you’d just be adding additional calories to your diet [R].

The carriers of the ‘C’ allele may benefit from avoiding snacking and being around food when bored. They can also benefit from eating more of their calories earlier in the day and not skipping breakfast.

Don’t Overdo Alcohol

A study that compared alcoholics with healthy people found that alcoholics had lower activity of circadian clock genes, including PER2 [R]. 

Lower PER2 activity in fat tissue has been linked with greater waist circumference in another human study [R].

Therefore you may benefit from avoiding alcohol or consuming it in moderation (1 glass per day or less). 

Chronic alcohol consumption can disrupt circadian genes, including PER2

Supplements

Forskolin

Forskolin activates circadian clock genes, including PER2, in animal cells [R].

While there are no studies that confirm the same thing happens in humans, there are studies that show that forskolin may help with weight loss.

There are several promising small studies, involving 20-80 people, that suggest that forskolin may help prevent weight gain, improve weight loss, and decrease body fat [R, R, R, R, R, R].

Forskolin also destroyed fat in animal and cell-based studies [R, R, R, R].

However, bear in mind that although forskolin may help with weight loss, it’s unlikely to be effective without other measures such as doing more exercise and changing your diet. Discuss with your doctor if forskolin may be helpful in your case and carefully follow your doctor’s instructions.

Forskolin activates PER2 in animal cells and several studies suggest it has beneficial effects on weight loss in humans.

Author photo
Biljana Novkovic
PhD

Biljana received her PhD in Ecological Genetics from Hokkaido University.

Before joining SelfHacked, she was a research scientist with extensive field and laboratory experience. She spent 4 years reviewing the scientific literature on supplements, lab tests and other areas of health sciences. She is passionate about releasing the most accurate science & health information available on topics, and she's meticulous when writing and reviewing articles to make sure the science is sound. She believes that SelfHacked has the best science that is also layperson-friendly on the web.

Disclaimer

The information on this website has not been evaluated by the Food & Drug Administration or any other official medical body. This information is presented for educational purposes only, and may not be used to diagnose or treat any illness or disease.

Also keep in mind that the “Risk Score” presented in this post is based only on a select number of SNPs, and therefore only represents a small portion of your total risk as an individual. Furthermore, these analyses are based primarily on associational studies, which do not necessarily imply causation. Finally, many other (non-genetic) factors can also play a significant role in the development of a disease or health condition — therefore, carrying any of the risk-associated genotypes discussed in this post does not necessarily mean you are at increased risk of developing a major health condition.

Always consult your doctor before acting on any information or recommendations discussed in this post — especially if you are pregnant, nursing, taking medication, or have been officially diagnosed with a medical condition.

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