weight & body fat

blood sugar control

nutrition

PEMT

A Surprising Player in Obesity and Diabetes (PEMT)

Written by Aleksa Ristic, MS (Pharmacy) on September 26th, 2019

PEMT is an overlooked player in fat and glucose metabolism. Specific variants correlate with obesity and diabetes, but they also have a positive side. Read on to check your PEMT gene and learn how it impacts metabolic health.

The Role of PEMT in Metabolism

Source: Wikimedia Commons

The PEMT gene encodes an enzyme that makes phosphatidylcholine (PC) in the liver. It makes sure you don’t run out of PC and choline, even if you don’t get them from food [R, R].

Choline and PC play central roles in fat transport and metabolism. Recent studies underline the importance of phospholipids in weight control, insulin functions, and metabolic health [R, R, R].

When scientists put PEMT-deficient mice on a high-fat diet, they [R]:

Didn’t develop obesity and insulin resistance
Quickly developed fatty liver
Used glucose more efficiently
Burned more energy

PEMT encourages the body to burn fat for energy; this is beneficial to some extent and shields the liver from disease, but it can lead to obesity and insulin resistance when fat intake is higher. Lower PEMT activity forces the body to use glucose and boosts insulin sensitivity, but excessive fat accumulates in the liver [R].

As always, the answer lies in the right balance—this post will help you find it.

PEMT produces phosphatidylcholine and choline, which are essential for fat metabolism. High PEMT activity protects the liver but plays a role in obesity and insulin resistance.

Do PEMT Variants Correlate with Obesity and Diabetes?

A clinical trial of 257 adults confirmed the above findings: obesity was more common in people with the “CC” genotype on rs7946 (higher PEMT), but this same group had lower rates of fatty liver [R].

A 2015 review included over 200,000 people and examined the association between different gene variants and obesity or fat distribution. One PEMT variant, rs4646404-G, correlated with the waist-to-hip ratio (WHR). High WHR (larger waist circumference relative to hip size) indicates a buildup of abdominal fat (central or abdominal obesity), and it’s a significant risk factor for heart disease and metabolic disorders [R, R, R].

Two more variants, rs4646343-G and rs7946-C, show a weaker correlation with WHR [R].

In over 370 individuals, people with at least one “G” allele on rs12325817 (lower PEMT) had two times lower rates of diabetes compared with those with the “CC” genotype [R].

Variants that increase PEMT activity are associated with weight gain and abdominal obesity; decreased PEMT activity correlates with lower rates of diabetes.

How It Works

Scientists noticed that PEMT-deficient mice were more likely to gain weight and become insulin-resistant when supplemented with choline. Thus, higher PEMT may play a role in obesity and diabetes by making excessive choline [R, R].

Following this observation, they set out to determine how choline induced these metabolic changes and discovered the following [R, R]:

It stimulated fat transport out of the liver and increased blood lipids
It suppressed PPAR-gamma receptors in the liver
It boosted glucagon levels and impaired glucose metabolism

Additionally, increased PEMT expression in fat tissue may contribute to abdominal fat buildup [R, R, R].

According to animal trials, excess choline from high PEMT activity may contribute to obesity and diabetes by increasing blood lipids, suppressing PPAR-gamma receptors, and impairing glucose metabolism.

Your PEMT Results for Obesity and Diabetes

Primary SNPs:

PEMT rs7946

‘T’ = Doesn’t correlate with obesity
‘C’ = Correlates with obesity

Population frequency:

Around 37% of the general population has the “CC” genotype
Around 10% of European descendants have this genotype

PEMT rs12325817

‘G’ = Correlates with lower rates of diabetes
‘C’ = Doesn’t correlate with diabetes

Population frequency:

Around 61% of the general population has the “CC” genotype
Around 31% of European descendants have this genotype

Other important SNPs:

PEMT rs4646404

‘A’ = Doesn’t correlate with abdominal obesity
‘G’ = Correlates with abdominal obesity

Population frequency:

Around 74% of the general population has the “GG” genotype
Around 43% of European descendants have this genotype

PEMT rs4646343

‘T’ = Doesn’t correlate with abdominal obesity
‘G’ = Correlates with abdominal obesity

Population frequency:

Around 65% of the general population has the “GG” genotype
Around 31% of European descendants have this genotype

SNP Table

variant	genotype	frequency	risk allele
rs7946
rs12325817
rs4646404
rs4646343

Recommendations

Lifestyle

Stress Reduction

Stress causes the pancreas to release more glucagon, which increases blood glucose and may worsen the effects of overactive PEMT. The stress hormone, cortisol, mediates this effect [R].

Stress plays a crucial role in obesity and insulin resistance, and it’s among the worst enemies in maintaining optimal metabolic health [R, R, R].

Embrace Cold

Cold exposure may lessen the harmful effects of overactive PEMT by boosting PPAR-gamma and adiponectin. As a result, it improved insulin sensitivity and glucose metabolism in a couple of small clinical trials [R, R, R, R].

Short-term cold exposure may also help burn calories. One study even suggested it “may contribute to counteracting the current obesity epidemic.” [R, R].

You can practice cold exposure wherever you are by taking cold showers. From Joe’s personal experience: “they are perfect for balancing blood sugar and insulin.”

Diet

Limit the Intake of Saturated Fat

The negative effects of overactive PEMT in mice appeared only on a high-fat diet. Although clinical trials haven’t confirmed this, dietary fats may play an important role in humans, too.

You want to be particularly careful with saturated fat, as many human studies link its higher intake with obesity and insulin resistance [R, R, R].

Try to limit the intake of foods rich in saturated fat, such as [R, R]:

Lard
Palm oil
Butter
Cheese
Coconut oil

Should you eat more carbs instead? Not necessarily. Other types of fat, especially polyunsaturated fatty acids such as omega-3, may be the best swap when it comes to metabolic health [R, R, R].

High intake of saturated fats from lard, dairy, and palm oil may worsen the negative effects of PEMT on weight gain and blood sugar. Consume more polyunsaturated fatty acids instead.

Cinnamon

Cinnamon may improve insulin resistance and lower blood sugar and cholesterol by activating PPAR-gamma receptors [R, R].

Try to consume this delicious spice on a daily basis.

Supplements

The studies on mice blame excessive choline for weight gain and insulin resistance. If your variants boost PEMT activity, try not to make things worse by consuming too much choline in the form of supplements.

That said, choline is vital for the liver, heart, brain, and more. It’s best not to go below the recommended daily amount: 500 mg for men and 425 mg for women [R].

Some studies have linked higher choline intake with obesity and insulin resistance, while others found the opposite effects [R, R, R, R].

The following supplements may balance overactive PEMT by boosting PPAR-gamma:

Omega-3 fatty acids [R, R]
Zinc [R]
Curcumin [R]

They can have beneficial effects on obesity and diabetes by improving insulin sensitivity and reducing blood lipids [R, R, R, R, R].

PPAR-gamma activation benefits glucose metabolism and inflammation, but its impact on weight loss is mixed and depends on other factors [R, R, R, R, R].

You can check out a more complete list of PPAR-gamma activators over on SelfHacked.

That said, most supplements are still in the investigational phase and haven’t been approved by the FDA.

Aleksa Ristic

MS (Pharmacy)

Aleksa received his MS in Pharmacy from the University of Belgrade, his master thesis focusing on protein sources in plant-based diets.

Aleksa is passionate about herbal pharmacy, nutrition, and functional medicine. He found a way to merge his two biggest passions—writing and health—and use them for noble purposes. His mission is to bridge the gap between science and everyday life, helping readers improve their health and feel better.

Disclaimer

The information on this website has not been evaluated by the Food & Drug Administration or any other official medical body. This information is presented for educational purposes only, and may not be used to diagnose or treat any illness or disease.

Also keep in mind that the “Risk Score” presented in this post is based only on a select number of SNPs, and therefore only represents a small portion of your total risk as an individual. Furthermore, these analyses are based primarily on associational studies, which do not necessarily imply causation. Finally, many other (non-genetic) factors can also play a significant role in the development of a disease or health condition — therefore, carrying any of the risk-associated genotypes discussed in this post does not necessarily mean you are at increased risk of developing a major health condition.

Always consult your doctor before acting on any information or recommendations discussed in this post — especially if you are pregnant, nursing, taking medication, or have been officially diagnosed with a medical condition.

More weight & body fat blogs

A Surprising Player in Obesity and Diabetes (PEMT) A Heat-Generating Gene Linked to Weight Gain (UCP1) Can Our Genes Make Us Fat? (FTO)

More blood sugar control blogs

Are You At Risk for Insulin Resistance and Diabetic Complications? (FOXO1) A Surprising Player in Obesity and Diabetes (PEMT) The Role Of Amino Acids In Diet, Obesity, & Diabetes (PPM1K) The Link Between Diabetes and High-Carb Foods (TCF7L2) How An Insulin Gene Influences Diet and Blood Sugar (GIPR)

More nutrition blogs

The Role of Genes in Choline Deficiency (PEMT) A Surprising Player in Obesity and Diabetes (PEMT) A Heat-Generating Gene Linked to Weight Gain (UCP1) Can Our Genes Make Us Fat? (FTO) Can This Gene Affect Vitamin B12 Levels? (FUT2) The Role Of Amino Acids In Diet, Obesity, & Diabetes (PPM1K) How A Fat Metabolism Gene Affects Nutrition and Cognition (FADS2) The Link Between Diabetes and High-Carb Foods (TCF7L2) How An Insulin Gene Influences Diet and Blood Sugar (GIPR)

Content

The Role of PEMT in Metabolism Do PEMT Variants Correlate with Obesity and Diabetes? Your PEMT Results for Obesity and Diabetes

Unlock Personalized Results And So Much More!

Shipping Worldwide

30-Days Money-Back Guarantee*

HSA/FSA Eligible

Essential Bundle

SelfDecode DNA Kit

24/7 AI Health Coach
1250+ Comprehensive DNA Health Reports
Personalized Diet, Supplement, & Lifestyle Recommendations
Lifestyle Risk Assessments
Unlimited access to Labs Analyzer

$418

$376

Men's Health Month 10% Off

Essential

Bundle

Everything in essential
SelfDecode DNA Kit
Methylation Pathway
+130 Medical Reports
25+ Longevity Screener Risk Assessments

$667

$566

Men's Health Month 15% Off

Men's Health Month 30% Off

Ultimate Bundle

Everything in essential+
SelfDecode DNA Kit
Medication Check (PGx testing) for 50+ medications
40+ Family Planning (Carrier Status) Reports
Ancestry Percentages
Mitochondrial Ancestry

$894

$625

* SelfDecode DNA kits are non-refundable. If you choose to cancel your plan within 30 days you will not be refunded the cost of the kit.

We will never share your data

We follow HIPAA and GDPR policies

We have World-Class Encryption & Security

People Love Us

Rated 4.7/5 from 750+ reviews

People Trust Us

200,000+ users, 2,000+ doctors & 80+ businesses

SelfDecode is a personalized health report service, which enables users to obtain detailed information and reports based on their genome. SelfDecode strongly encourages those who use our service to consult and work with an experienced healthcare provider as our services are not to replace the relationship with a licensed doctor or regular medical screenings.

Policies

About

Support
Our Team
Affiliate Program
Privacy
Media

Navigation

Family Plan 👪
Gift SelfDecode 🎁
Analyze Bloodwork 🧪
Report Shop 🛒
Register My Kit
Careers
About
Login

A Surprising Player in Obesity and Diabetes (PEMT)

The Role of PEMT in Metabolism

Do PEMT Variants Correlate with Obesity and Diabetes?

How It Works

Your PEMT Results for Obesity and Diabetes

SNP Table

Recommendations

Lifestyle

Stress Reduction

Embrace Cold

Diet

Limit the Intake of Saturated Fat

Cinnamon

Supplements

Disclaimer

More weight & body fat blogs

More blood sugar control blogs

More nutrition blogs

Content

Unlock Personalized Results And So Much More!

Essential Bundle

Men's Health Month 10% Off

Essential

Bundle

Men's Health Month 15% Off

Men's Health Month 30% Off

Ultimate Bundle

Policies

About

Navigation

Health reports