inflammation & autoimmunity
gut health
SH2B3

The Link Between Inflammation and Celiac Disease (SH2B3, ATXN2)

Written by Aleksa Ristic, MS (Pharmacy) on May 11th, 2020
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The SH2B3 gene encodes a protein that controls the antibacterial response and inflammation. Read this post to learn about SH2B3 variants associated with celiac disease, and get gene-based tips.

SH2B3 in Immunity and Inflammation

The SH2B3 gene codes for SH2B adapter protein 3. This protein helps regulate an array of essential pathways, including [R]:

  • Inflammation and the immune response
  • Blood cell formation (hematopoiesis)
  • Cell growth and migration

Due to its wide range of functions, SH2B3 has considerable significance for human health. Studies have linked its variants with different autoimmune conditions, heart disease, blood disorders, and more [R, R].

The Role in Celiac Disease

Celiac disease (CD) is an immune gut disorder in which gluten, a protein found in most grains, damages the small intestine. The immune cells recognize gluten as a threat and trigger an aggressive inflammatory response, usually causing digestive issues and malabsorption [R, R].

Most people with celiac disease can manage the symptoms by following a strict gluten-free diet.

Scientists are still investigating the exact role of SH2B3 in CD development. This protein helps balance the immune response by reducing the activity of T-cells, pro-inflammatory cytokines, and various growth factors [R].

More precisely, SH2B3 may suppress Th-1 cell response, which is crucial for CD development. It may also prevent autoimmunity by inhibiting the formation of auto-antibodies [R].

Autoimmune gut damage triggered by dietary gluten is the hallmark of celiac disease. SH2B3 may have a protective role by suppressing T-cells, inflammatory cytokines, and auto-antibodies.

SH2B3 Variants and Celiac Disease Rates

Rs3184504

A large meta-analysis of over 24,000 European subjects identified a link between one SH2B3 variant and celiac disease (CD). People with the “T” allele at rs3184504 were 19% more likely to have CD [R].

The authors underlined the robust link with this variant and suggested it might play an actual role in CD development [R].

A Chinese meta-analysis of nearly 37,500 participants yielded similar results [R].

Type 1 diabetes is one of the risk factors for celiac disease. In a trial of 8,676 children, those with rs3184504-T were more likely to have both conditions [R, R].

The “T” allele at rs3184504 is associated with higher rates of celiac disease across different populations and age groups.

Rs653178

A trial of almost 26,000 European subjects found another SH2B3 variant with a similar CD association: people with the “C” allele at rs653178 had 20% higher disease rates. However, rs3184504 and rs653178 are almost always inherited together, so they act as a single genetic factor [R].

Note: Some authors attribute this variant to the ATXN2 gene. If you see a paper discussing the link between ATXN2 and gluten intolerance, keep in mind it likely refers to the same genetic factor discussed here.

Other Conditions

Besides celiac disease, the above variants correlate with an array of conditions such as:

  • Heart disease and high blood pressure [R, R]
  • Diabetes type 1 [R, R]
  • Rheumatoid arthritis [R, R]
  • Multiple sclerosis [R]
  • Colon and endometrial cancer [R]
  • Blood disorders [R, R, R]

How It Works

Immune Response Control

In autoimmunity, overactive T cells stimulate the production of self-destructive antibodies. SH2B3 helps prevent this by keeping inflammatory proteins — such as TNF-alpha, IL-6, and Th1 cytokines — in check [R, R, R].

SH2B3 variants associated with celiac disease probably reduce the activity of this gene, which then fails to suppress an autoimmune reaction. Further research should clarify the exact mechanisms.

Antibacterial Protection

A study of over 9,000 volunteers found that rs3184504-T, which is associated with CD, enhances antibacterial protection. When challenged with bacterial components, white blood cells from the subjects with this variant produced up to 5x times more IL-1b [R].

People with this variant may have stronger antibacterial protection, but, on the other hand, excessive gut inflammation can contribute to CD development [R].

The above variants may contribute to excess release of inflammatory cytokines, TNF-alpha and IL-1b. Researchers are still looking for the exact mechanisms behind this effect.

Your SH2B3 Results for Celiac Disease

SNP Table

variant genotype frequency risk allele
rs3184504
rs653178

 

SNP Summary and Table

Primary SNPs:

SH2B3 rs3184504

  • ‘C’ = not associated with celiac disease
  • ‘T’ = associated with higher rates of celiac disease

SH2B3 rs653178

  • ‘T’ = not associated with celiac disease 
  • ‘C’ = associated with higher rates of celiac disease

Population Frequency

These two variants are almost always inherited together, so they act as a single genetic factor. Around 21% of European descendants carry one copy, and 50% carry both copies of the “problematic” alleles. 

In other populations, these alleles are much less frequent and range from 0.6-13%.

 

 

Recommendations

Diet

Elimination Diet

Gluten

The only effective treatment for celiac disease is a strict gluten-free diet. Most people can successfully manage their symptoms by avoiding gluten.

This approach may be essential for people with SH2B3 variants, as gluten can spike TNF-alpha and Th1 cytokines in people who don’t tolerate it. Th1 cells play a central role in celiac disease development [R, R, R].

This protein is present in the following grains and their products [R]:

  • Wheat
  • Rye
  • Spelt
  • Barley
  • Triticale

If you don’t have celiac disease, but you are experiencing digestive issues, consider removing gluten from your diet and see if your symptoms improve.

Lectins and Dairy

Dietary lectins may also worsen inflammation in people sensitive to them. For example, lectins contributed to autoimmunity in one study with rheumatoid arthritis patients. Preliminary research suggests that avoiding lectins may reduce the symptoms of autoimmune conditions in sensitive individuals [R, R].

Lectins may stimulate TNF-alpha and IL-1b production in response to bacterial infections and thus mimic your SH2B3 variants [R, R, R].

A trial of 800 people suggested TNF-a levels as a marker for lectin exposure in sensitive people. Additionally, lectins may worsen the impact of your variant by promoting Th1-mediated immunity [R, R, R, R].

Gut damage and inflammation in celiac disease may cause temporary lactose intolerance. Such patients may need to avoid dairy until their gut lining recovers [R].

Elimination diets such as the Lectin Avoidance Diet may help identify and remove common food irritants — such as lectins, gluten, and dairy — that may be worsening autoimmunity in sensitive individuals [R, R, R].

Gluten, lectins, and dairy may contribute to inflammation and digestive issues in sensitive people. Elimination diets can help identify and remove common food irritants.

Nutritional Yeast

Beta-glucans and cell wall components from nutritional yeast (S. cerevisiae) can support the gut microbiome and help with a range of digestive issues [R, R, R, R].

They may silence inflammation by reducing TNF-a and IL-1b release in response to bacteria. At the same time, they help remove harmful gut bacteria and support the good ones [R, R, R, R].

Nutritional yeast is rich in zinc and different B vitamins, such as [R, R]:

Since many celiac disease patients are deficient in B vitamins and zinc, consuming nutritional yeast may be a great way to supply these essential nutrients [R, R, R].

Important: Unlike nutritional yeast, grown on glucose or molasses, brewer’s yeast is usually grown on grains and may contain gluten. There are gluten-free brewer’s yeasts, just make sure to check the labels [R].

Nutritional yeast can reduce TNF-a and IL-1b release in response to bacteria. It’s rich in zinc and B vitamins, which are essential for celiac disease patients. 

Supplements

Probiotics

Just like beta-glucans, probiotics can suppress the growth of harmful bacteria in the intestines, which cause excess TNF-alpha and IL-1b levels. Two large meta-analyses confirmed the potential of probiotic supplementation to reduce TNF-a [R, R].

Gut microbiome disturbance plays a significant role in celiac disease. Most CD patients have fewer Bifidobacterium strains and more harmful strains such as Clostridium, Bacteroides, and Enterobacteria [R].

Bacterial overgrowth in the small intestine may worsen celiac disease and hinder gut recovery [R].

Probiotic (Bifidobacterium spp.) supplementation in patients with celiac disease has yielded mixed results. In one trial, it improved the symptoms but not immunological markers. In another, it only improved lab markers of inflammation [R, R].

Probiotic supplementation may help improve microbiome disturbance and reduce SH2B3-mediated gut inflammation. The beneficial effects on celiac disease are inconclusive.

Omega-3

Long-term supplementation with omega-3 fatty acids from fish oil (EPA + DHA) significantly reduced IL-1b in 174 patients. In a small trial of 9 volunteers, they suppressed both TNF-a and IL-1b [R, R].

Omega-3s may also lower the levels of Th1 cytokines, such as IL-2 and IFN-gamma, which may be elevated in people with the discussed variants [R, R].

According to robust clinical evidence, omega-3s may help with various inflammatory and autoimmune conditions and reduce the need for anti-inflammatory drugs [R, R].

Omega-3 fatty acids can support the gut microbiota, strengthen the intestinal wall, and improve the gut-brain connection. However, studies are yet to investigate their potential in celiac disease patients [R].

Omega-3 fatty acids from fish oil can suppress SH2B3-related cytokines, improve gut health, and help with autoimmunity. Their therapeutic potential in celiac disease is unknown.

Author photo
Aleksa Ristic
MS (Pharmacy)

Aleksa received his MS in Pharmacy from the University of Belgrade, his master thesis focusing on protein sources in plant-based diets.  

Aleksa is passionate about herbal pharmacy, nutrition, and functional medicine. He found a way to merge his two biggest passions—writing and health—and use them for noble purposes. His mission is to bridge the gap between science and everyday life, helping readers improve their health and feel better.

Disclaimer

The information on this website has not been evaluated by the Food & Drug Administration or any other official medical body. This information is presented for educational purposes only, and may not be used to diagnose or treat any illness or disease.

Also keep in mind that the “Risk Score” presented in this post is based only on a select number of SNPs, and therefore only represents a small portion of your total risk as an individual. Furthermore, these analyses are based primarily on associational studies, which do not necessarily imply causation. Finally, many other (non-genetic) factors can also play a significant role in the development of a disease or health condition — therefore, carrying any of the risk-associated genotypes discussed in this post does not necessarily mean you are at increased risk of developing a major health condition.

Always consult your doctor before acting on any information or recommendations discussed in this post — especially if you are pregnant, nursing, taking medication, or have been officially diagnosed with a medical condition.

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