gut health
CYP2C19

Can This Gene Increase Your Risk of Peptic Ulcers? (CYP2C19)

Written by Carlos Tello, PhD on May 13th, 2020
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The CYP2C19 gene encodes an enzyme that breaks down many clinical drugs. A highly active variant of this gene has been associated with peptic ulcers. Read on to learn if your variant increases your risk of this condition.

What Is the CYP2C19 Gene?

The CYP2C19 gene encodes a member of the cytochrome P450 family. These enzymes are involved in the breakdown and elimination of most toxins and drugs from the body. CYP2C19 is mostly found in the liver and metabolizes ~10% of clinical drugs, including [R, R]:

  • Antidepressants (such as citalopram, escitalopram, sertraline, imipramine, and amitriptyline) [R, R, R, R]
  • Proton pump inhibitors (such as omeprazole, esomeprazole, pantoprazole, and rabeprazole) [R, R, R, R]
  • Anti-anxiety drugs (such as diazepam and phenazepam) [R, R]
  • Blood thinners (such as clopidogrel, prasugrel, and warfarin) [R, R, R]
  • Antimalarial drugs (such as progunail and primaquine) [R, R]
  • Antifungals (voriconazole) [R]
  • Antipsychotics (clozapine) [R]
  • Anti-seizure medication (phenytoin) [R]
  • Immunosuppressants (leflunomide) [R]
  • Methadone [R]
  • MDMA (ecstasy) [R]

Variants in the CYP2C19 gene may alter the rate at which these drugs are broken down. An elevated CYP2C19 activity may reduce the effectiveness of the treatment (by speeding up drug clearance) but also increase it if the drug needs to be broken down to become active, as is the case for clopidogrel. 

CYP2C19 is also involved in the metabolism of substances naturally produced in the body. For instance, it breaks down arachidonic acid into different epoxyeicosatrienoic acids (EETs). These molecules are involved in blood pressure regulation, blood vessel formation, and inflammation [R, R, R, R].

This enzyme can also break down female sex hormones (estrogens), which may explain why variants with increased activity reduce the risk of breast cancer and endometriosis [R, R, R, R].

Finally, its expression in the fetal brain suggests a potential role in brain development [R].

The CYP2C19 encodes an enzyme that breaks down many clinical drugs and some substances naturally produced in the body.

CYP2C19 Variants and Peptic Ulcers

What Are Peptic Ulcers?

Peptic ulcers are open sores in the lining of the upper digestive tract. They are most common in the lining of the stomach (gastric ulcers), though they can also emerge in the esophagus or small intestine [R, R, R, R].

The most common causes of peptic ulcers are NSAIDs and H. pylori infection. They may also be caused by other medications (such as steroids and bisphosphonates) and rare diseases like Zollinger-Ellison syndrome, cystic fibrosis, and hyperparathyroidism [R, R, R, R].

High CYP2C19 Activity May Increase the Risk of Peptic Ulcers

There’s a few potential hypotheses about why variations in CYP2C19 are associated with ulcers.

Researchers have speculated that the effect could be due to [R]:

  • Increased breakdown of proton pump inhibitors (leading to reduced protection of the stomach lining)
  • Altered arachidonic acid metabolism (thus increasing inflammation and oxidative stress)
  • Increased breakdown of estrogens (which seem to protect from peptic ulcers)

Therefore, inhibiting this enzyme could be a good way to counteract the negative genetic effects that these variants have on ulcers.

In addition, several studies have associated this variant with a faster breakdown and clearance of proton pump inhibitors. This may reduce ulcer healing and H. pylori eradication by failing to lower stomach acids [R, R, R, R, R, R, R, R, R].

Role of the rs12248560 Polymorphism

The rs12248560 polymorphism, also known as CYP2C19*17, is located in the region that controls gene expression (the promoter). Its minor allele ‘T’ is associated with increased gene expression and protein activity [R, R].

In a British study of over 1,200 people in which variants of genes encoding different cytochromes were tested, the minor allele of rs12248560 was the only one associated with an increased incidence of peptic ulcers [R]. 

Peptic ulcers are open sores in the lining of the stomach, esophagus, or small intestine. A CYP2C19 variant with higher activity is associated with an increased incidence of peptic ulcers and may impair their healing.

Your CYP2C19 Results for Peptic Ulcers

 

 

SNP Summary and Table

Primary SNP: CYP2C19 rs12248560 

  • ‘C’ = Normal risk of peptic ulcers.
  • ‘T’ = Increased risk of peptic ulcers.

Population Frequency

The ‘C’ allele is clearly the most abundant one. 72% of the world population carries two copies of this variant versus only 3% of ‘TT’.

The ‘T’ allele is more common in people with African and European ancestry (41% of carriers in each case) but almost non-existent in East Asian descendants.

SNP Table

variant genotype frequency risk allele
rs12248560

 

 

Recommendations

Diet

Dietary Polyphenols

Multiple studies have found that certain dietary polyphenols conferred protection against peptic ulcers. Quercetin, a common flavonoid found in many fruits and vegetables, appears to protect the lining of the digestive tract by suppressing acid secretion and has been shown to inhibit CYP2C19 [R, R, R].

Some of the foods richest in quercetin include leafy green vegetables, red grapes, and berries.

Other polyphenols may protect the lining of the digestive tract by stimulating blood flow or preventing the release of histamine. Still others scavenge free radicals, inhibit oxidizing enzymes, and stimulate the body’s antioxidant defense mechanisms [R, R, R].

Food polyphenols proven to inhibit CYP2C19 include:

  • Resveratrol (found in red wine, dark chocolate, berries, and peanuts) [R]
  • Caffeic acid (found in sunflower seeds, apple sauce, apricots, prunes, and some herbs and spices) [R]
  • Bergamottin (found in grapefruit juice) [R]
  • Diosmetin (found in the peel of citrus fruits) [R]
  • Naringenin (found in citrus fruits, tart cherries, tomatoes, dark chocolate, and beans) [R]
  • Epigallocatechin gallate (found mainly in green tea) [R, R]

Garlic

Garlic is a hotly debated complementary approach for ulcers. In a recent meta-analysis, its active compound allicin improved healing rate and remission of the symptoms when used as an add-on therapy in case of H. pylori infection with ulcers [R].

However, the authors of this analysis noted that the evidence was still relatively weak and in need of further investigation.

This compound also inhibited overactive CYP2C19 variants, thus delaying the clearance of the proton pump inhibitor omeprazole, in a small trial on 18 people [R].

Garlic can be irritating on the stomach, so caution is advised if you already have ulcers.

Chilli Peppers

Some documents and guidelines advise against eating chili peppers if you have ulcers, but a surprising amount of research has suggested that capsaicin, the active ingredient in chili, could actually be beneficial [R, R, R].

Capsaicin inhibits the growth of H. pylori bacteria, which may explain why people given chili powder healed more quickly than their peers in a study of 50 ulcer patients [R].

This compound prevents stomach ulcers in animals, and may also help heal existing ones. It inhibits stomach acid secretions, reduces acidity, promotes mucus secretion, and stimulates blood flow in the stomach [R].

In a study in rats, capsaicin inhibited CYP2C19 and other enzymes from the same family [R].

We advise caution with capsaicin if you already have stomach ulcers, because it can also irritate the stomach.

Cruciferous Vegetables

Extracts from cruciferous vegetables such as kale and cabbage prevented the development of ulcers in different animal models by stimulating the production of mucus and lowering stomach acids [R, R, R].

Their active compound sulforaphane inhibited H. pylori  infections and activity in human, animal, and cell-based studies [R, R, R, R, R].

In H. pylori-infected type 2 diabetic patients, broccoli sprout powder, in addition to standard triple therapy, considerably improved H. pylori eradication. It also improved markers of heart health in these subjects [R].

Rats fed with kale showed a reduced activity of CYP2C19 and other proteins from the same family (measured as increased blood levels of drugs broken down by these enzymes), suggesting it may help people with the overactive variant [R].

Eating a diet rich in polyphenols and cruciferous vegetables helps prevent peptic ulcers and may reduce CYP2C19 activity. Garlic and chilli peppers may also help, but people with existing ulcers should be cautious due to their potential to irritate the stomach.

Lifestyle

Stress Management

Most doctors and researchers agree that psychological stress and peptic ulcers are closely linked. In fact, a cohort study of 17,525 Danish adults found that people under high stress were more than twice as likely as people under low stress to develop ulcers [R, R].

Anxiety disorders, personality disorders, and panic disorders have also been directly linked to peptic ulcers. One study further found that alcohol or nicotine dependence exacerbated the connection between anxiety and ulcers; that is, people with anxiety disorders who were also dependent on alcohol or nicotine were even more likely to have ulcers [R, R].

A large body of research suggests that managing stress is very important for healing peptic ulcers. Some researchers have recommended the inclusion of cognitive behavioral therapies and other psychological strategies to help manage family, job, economic, and workload problems [R].

Studies in humans and mice have associated high CYP2C19 activity with anxiety and depression, possibly because it reduces the volume and function of a brain region involved in these disorders (the hippocampus). However, a recent human study couldn’t find this association [R, R, R, R].

People with overactive CYP2C19 variants may break down anti-anxiety and antidepressant drugs faster, potentially making the treatment less effective [R, R, R, R, R, R].

The close link between peptic ulcers and psychological stress has been studied extensively. CYP2C19 activity may also worsen anxiety disorders and interfere with their treatment.

Supplements

Black Cumin

In a study of 88 patients with indigestion positive for H. pylori, black seed helped eradicate the bacteria and symptoms. A minimal dose of 2 g of the seeds (in combination with omeprazole) was effective and comparable to standard triple antibiotic therapy, while both lower and higher doses were less efficient [R].

Some studies suggest that it may also help protect the stomach lining from damage and ulcers, mostly based on findings from animal studies [R, R].

Black cumin seed protected the stomach lining from the harmful effects of alcohol in rats. The oils also prevented gut damage [R, R].

Its active compound thymoquinone showed moderate CYP2C19 inhibition in an enzymatic assay [R].

Ginger

Ginger increased protective prostaglandins in the stomach lining in 43 osteoarthritis patients who used NSAIDs long-term. Ginger could potentially be useful in people who developed ulcers from NSAIDs, but further clinical trials are needed [R].

In cellular studies, antioxidants in ginger (such as the flavonoids gallic and cinnamic acid) blocked the growth of stomach-ulcer-causing H. pylori, mainly by fighting free radicals [R, R].

Ginger extract reduced the drug-metabolizing activity of CYP2C19 in the lab [R].

Licorice Root

Licorice was a good adjunctive treatment to standard clarithromycin triple therapy in the treatment of H. pylori in a clinical trial on 120 people and increased the eradication rate by about 20% [R].

Licorice extract and its component licochalcone A inhibited CYP2C19 and other enzymes from the same family in the lab [R, R].

Preliminary research suggests that black seed oil, ginger, and licorice root may help with peptic ulcers mainly by helping eradicate H. pylori. Some of their components inhibited CYP2C19 activity.

Author photo
Carlos Tello
PhD

Carlos received his PhD and MS from the Universidad de Sevilla.

Carlos spent 8 years in the laboratory investigating mineral transport in plants. He then started working as a freelancer, mainly in science writing, editing, and consulting. Carlos is passionate about learning the mechanisms behind biological processes and communicating science to both academic and lay audiences. He strongly believes that scientific literacy is crucial to maintaining a healthy lifestyle and avoiding falling for scams.

Disclaimer

The information on this website has not been evaluated by the Food & Drug Administration or any other official medical body. This information is presented for educational purposes only, and may not be used to diagnose or treat any illness or disease.

Also keep in mind that the “Risk Score” presented in this post is based only on a select number of SNPs, and therefore only represents a small portion of your total risk as an individual. Furthermore, these analyses are based primarily on associational studies, which do not necessarily imply causation. Finally, many other (non-genetic) factors can also play a significant role in the development of a disease or health condition — therefore, carrying any of the risk-associated genotypes discussed in this post does not necessarily mean you are at increased risk of developing a major health condition.

Always consult your doctor before acting on any information or recommendations discussed in this post — especially if you are pregnant, nursing, taking medication, or have been officially diagnosed with a medical condition.

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