rs1799945

Chromosome : 6 , Position: 26090951
Most conditions are affected by anywhere from hundreds to millions of genetic variants (SNPs). A single SNP usually has a minor contribution to a person’s overall genetic risk for a certain condition. That is why you shouldn't consider or act on a SNP in isolation. Instead, we use SNPs to determine polygenic risk scores (PRSs), which are the basis of most health reports.
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Reference AlleleC
Alternative Alleles:  T, G

Traits

Trait Variant Impact PMID Author (year)
Mean corpuscular volume G
Unknown journal UKB Neale v2 (2018)
Red cell distribution width G
PLoS One Pilling LC (2017)
Hemoglobin G
Cell Vuckovic D (2020)
Hemoglobin concentration G
Cell Astle WJ (2016)
Reticulocyte fraction of red cells G
Cell Vuckovic D (2020)
Hematocrit G
Cell Astle WJ (2016)
Reticulocyte count G
Cell Astle WJ (2016)
Platelet count G
Cell Astle WJ (2016)
Platelet distribution width G
Unknown journal UKB Neale v2 (2018)
Diastolic blood pressure G
Nat Genet Ehret GB (2016)
Diastolic blood pressure (cigarette smoking interaction) G
Am J Hum Genet Sung YJ (2018)
Diastolic blood pressure [EA, initial] G
Hypertension Wain LV (2017)
Glycated hemoglobin levels G
Nat Genet Chen J (2021)
Hemoglobin levels G
Commun Biol Oskarsson GR (2020)
Hypertension G
Nature Ehret GB (2011)
Iron status biomarkers (ferritin levels) G
Hum Mol Genet Raffield LM (2017)
Iron status biomarkers (iron levels) G
Hum Mol Genet Raffield LM (2017)
Iron status biomarkers (transferrin saturation) G
Hum Mol Genet Raffield LM (2017)
Iron status biomarkers [iron] G
Hum Mol Genet Pichler I (2011)
Mean arterial pressure G
Nat Genet Liu C (2016)
Mean corpuscular hemoglobin G
Cell Chen MH (2020)
Mean corpuscular hemoglobin concentration G
Cell Chen MH (2020)
Medication use (agents acting on the renin-angiotensin system) G
Nat Commun Wu Y (2019)
Systolic blood pressure G
Nature Ehret GB (2011)
Systolic blood pressure (cigarette smoking interaction) G
Am J Hum Genet Sung YJ (2018)
Systolic blood pressure [EA, initial] G
Hypertension Wain LV (2017)

Summary

rs1799945, also known as H63D or His63Asp, represents a SNP that accounts for a mild form of hereditary hemochromatosis (HH), an iron overload condition in which mutations of certain genes involved in iron metabolism disrupt the body’s ability to regulate uptake of iron, causing increased intestinal iron absorption. The most common form is caused by mutations in the HFE gene, which are inherited recessively. The gene for HH is closely linked to the HLA-A3 locus on the short arm of chromosome 6 [edit]

The HFE gene encodes the human hemochromatosis protein, which is located on the short arm of chromosome 6 at 6p21.3. The protein regulates iron absorption by regulating the interaction of the transferrin receptor with transferrin. The HFE protein interacts with TFRC, the transferrin receptor protein 1, so its primary mode of action is through regulation of the iron storage hormone hepcidin.

Mutations in the HFE Gene[edit]

The three most common HH-causing mutations in the HFE gene (chromosome 6p21.3) are C282Y (A at rs1800562 instead of G), H63D (G at rs1799945 instead of C), and S65C (T at i3002468 instead of A). At least 17 other mutations in the HFE gene have been linked to HH. 60-90% of people with HH have two copies of the C282Y mutation. The H63D mutation is also quite common—about 20% of people carry a copy of the mutation, and about 3% have two copies. This mutation is not as severe as the C282Y mutation, and only causes symptoms when someone has both the H63D and the C282Y mutations. Even then, only a small fraction of people with one copy of each mutation actually exhibit evidence of iron overload. Additionally, those who have two copies of H63D do not exhibit any symptoms and are not at risk for iron overload. The S65C mutation is less common, and will also only cause symptoms if in combination with C282Y. For both H63D/C282Y and S65C/C282Y single mutation individuals, symptoms are usually mild if they develop at all.

Influence on Iron Levels[edit]

HH has four main pathophysiological mechanisms [edit]

The symptoms of HH depend on the person’s mutation as well as their sex and diet. The older a person, the more likely iron has accumulated in the body over time. Typically, complications may develop later in life between the ages of 40 and 60 in men and in post-menopausal women. If symptoms do develop, these are typically seen in the liver, skin, pancreas, heart, joints, and testes. At first, one may feel symptoms such as joint pain and stiffness, fatigue, abdominal pain, and weight loss. Later symptoms may lead to more serious conditions such as cirrhosis of the liver, cancer, liver failure, diabetes, congestive heart failure, and arthritis.

Symptomatic Findings in Patients with HH[edit]

  • Liver- hepatomegaly, splenomegaly, liver failure
  • Joints- arthritis, swelling, chondrocalcinosis
  • Heart- dilated cardiomyopathy, CHF
  • Skin- increased pigmentation
  • Endocrine- testicular atrophy, hypogonadism
  • Hypothyroidism


[PMID 22232660] Brain structure in healthy adults is related to serum transferrin and the H63D polymorphism in the HFE gene




[PMID 18194558] A hierarchical and modular approach to the discovery of robust associations in genome-wide association studies from pooled DNA samples.


[PMID 18603647] Functional genetic polymorphisms and female reproductive disorders: Part I: Polycystic ovary syndrome and ovarian response.


[PMID 18795173] Variants in iron metabolism genes predict higher blood lead levels in young children.


[PMID 19084217] Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.


[PMID 19165391] Iron metabolism genes, low-level lead exposure, and QT interval.


[PMID 19237423] Is there an optimum endurance polygenic profile?


[PMID 19401444] Body iron stores and glucose intolerance in premenopausal women: role of hyperandrogenism, insulin resistance, and genomic variants related to inflammation, oxidative stress, and iron metabolism.


[PMID 19862010] Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.


[PMID 20659343] HFE gene variants modify the association between maternal lead burden and infant birthweight: a prospective birth cohort study in Mexico City, Mexico.


[PMID 21553046] Should we screen for hereditary hemochromatosis in healthy Lebanese: a pilot study.


[PMID 21679129] Genotyping of the hemochromatosis HFE p.H63D and p.C282Y mutations by high-resolution melting with the Rotor-Gene 6000(R) instrument.


[PMID 22611049] Lower serum hepcidin and greater parenchymal iron in nonalcoholic fatty liver disease patients with C282Y HFE mutations.




[PMID 23389292] Hemochromatosis (HFE) gene mutations and risk of gastric cancer in the European Prospective Investigation into Cancer and Nutrition (EPIC) study


[PMID 23792061] Meta-analyses of HFE variants in coronary heart disease


[PMID 22735619] Sample-to-SNP kit: a reliable, easy and fast tool for the detection of HFE p.H63D and p.C282Y variations associated to hereditary hemochromatosis.


[PMID 25085015] Examination of HFE associations with childhood leukemia risk and extension to other iron regulatory genes


[PMID 25634189] Genetic Variant Coding for Iron Regulatory Protein HFE Contributes to Hypertension, the TAMRISK Study


[PMID 24663082] Influence of diet, menstruation and genetic factors on iron status: a cross-sectional study in Spanish women of childbearing age


[PMID 25880661] Decision Tree Analysis of Genetic Risk for Clinically Heterogeneous Alzheimer’s Disease


[PMID 26024779] Association of genetic variants with response to iron supplements in pregnancy


[PMID 26597663] Genetic factors influencing ferritin levels in 14,126 blood donors: results from the Danish Blood Donor Study


[PMID 26690219] Association Studies of HFE C282Y and H63D Variants with Oral Cancer Risk and Iron Homeostasis Among Whites and Blacks.

More Information

rs1799945 is a SNP in the HFE gene. It influences blood pressure and cardiovascular risk. 

This SNP also accounts for a mild form of hereditary hemochromatosis (HHC) (a genetic disorder of iron metabolism) [R].

The ''G'' allele was associated with a 6% increased risk of coronary heart disease (CHD) (P=0.02, odds ratio (OR)=1.06) [R].

Individuals with ''G'' allele had a 1.4-fold risk for hypertension at the age of 50 years compared with the CC genotype carriers (P = 0.037). The blood pressure (BP) readings were also higher in those with the minor ''G'' allele when compared to ones having a normal genotype [R].

The variant allele ''G'' was significantly associated with an adequate response to iron supplementation in pregnancy [R].

The minor (G) allele was increased in cyclists when compared to controls [R].

Homozygocity for the ''C'' allele was associated with iron deficiency in women [R].

Population Alleles Frequency

ethhicity frequency
T G
African/African-American 0.027
Latino/Admixed American 0.0969
Ashkenazi Jewish 0.1069
East Asian 0.027
European 0.1452
Other (population not assigned) 0.1273

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