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  3. SBF2

SBF2 (SET binding factor 2)

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Summary of SBF2

The gene codes for a protein, SET binding factor 2. Mutations are linked to Charcot-Marie-Tooth Disease, type 4B2 [R].

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The Function of SBF2

Guanine nucleotide exchange factor (GEF) which may activate RAB28. Promotes the exchange of GDP to GTP, converting inactive GDP-bound Rab proteins into their active GTP-bound form.

Protein names

Recommended name:

Myotubularin-related protein 13

Alternative name(s):

SET-binding factor 2

SBF2 SNPs

    To see your genotype, you should be logged in and have a file with your genotype uploaded.

  1. RS10500715 (SBF2) ??
  2. RS1867138 (SBF2) ??
  3. RS2403221 (SBF2) ??

Top Gene-Substance Interactions

Substances That Increase SBF2

Substances Interaction Organism Category

Substances That Decrease SBF2

Substances Interaction Organism Category

Advanced Summary

     Charcot-Marie-Tooth disease At least five SBF2 gene mutations have been identified in patients with a form of Charcot-Marie-Tooth disease known as type 4B2. Some of these mutations alter the structure of SET binding factor 2 by introducing a premature stop signal that results in an abnormally short protein. Other mutations lead to the production of a protein that is missing a critical segment. All of these mutations probably result in a nonfunctional protein. Although it is unclear how SBF2 gene mutations lead to this disorder, myelin production is probably disrupted. Irregular myelin structure (called outfolding) is a characteristic sign of type 4B2 Charcot-Marie-Tooth disease. Individuals with this disorder may also experience a buildup of fluid pressure within the eye (glaucoma) beginning in childhood or adolescence. Researchers believe that the appearance of glaucoma depends on the type of SBF2 gene mutation. A mutation that causes complete loss of protein function interferes with the development of the eye's trabecular meshwork, leading to impaired fluid drainage and glaucoma. Less severe mutations, which allow partial function of the SET binding factor 2 protein, do not cause glaucoma.

     The SBF2 gene (also called MTMR13) provides instructions for making a protein called SET binding factor 2. The function of this protein is unknown, but it is probably involved in the development of specialized cells in the nervous system called Schwann cells. Schwann cells produce myelin, the protective substance that covers nerve cells and promotes the rapid transmission of nerve impulses. SET binding factor 2 probably also plays a role in the development of mesh-like canals (trabecular meshwork) that surround the colored part of the eye (the iris). The trabecular meshwork helps drain excess fluid from the eye.

Conditions with Increased Gene Activity

Condition Change (log2fold) Comparison Species Experimental variables Experiment name

Conditions with Decreased Gene Activity

Condition Change (log2fold) Comparison Species Experimental variables Experiment name

Technical

The following transcription factors affect gene expression:

  • GR
  • GR-alpha
  • Egr-1
  • CREB
  • deltaCREB
  • C/EBPbeta
  • STAT1
  • STAT1beta
  • STAT1alpha
  • GATA-2

Tissue specificity:

Widely expressed. Expressed in spinal cord.

Caution:

In contrast to other members of the family, it lacks a canonical protein-tyrosine phosphatase domain and lacks the conserved Cys residue in position 1410 which is replaced by a Leu residue. It therefore probably does not have phosphatase activity.

Molecular Function:

  • Phosphatase Regulator Activity
  • Phosphatidylinositol Binding
  • Rab Guanyl-Nucleotide Exchange Factor Activity

Biological Processes:

  • Myelination
  • Protein Tetramerization
*synonyms

Synonyms/Aliases/Alternative Names of the Gene:

hypothetical protein| Charcot-Marie-Tooth neuropathy 4B2 homolog| CMT4B2| DENND7B| DENN/MADD domain containing 7B| H920_19929| M91_19819| MDA_GLEAN10015033| mMTMH1| MTMR13| myotubularin related protein 13| Myotubularin-related protein 13| myotubularin-related protein 5| N302_12429| N303_00104| N308_10404| N309_07837| N320_02510| N324_06419| N329_06644| N332_06586| N335_04701| N340_13623| PAL_GLEAN10007456| PANDA_004249| RGD1559442| TREES_T100013643| UY3_04523| Y1Q_004363| sbf2

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