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  3. COL1A2

COL1A2 (Collagen type I alpha 2 chain)

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The Function of COL1A2

Type I collagen is a member of group I collagen (fibrillar forming collagen).

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Protein names

Recommended name:

Collagen alpha-2

Short name:

I

Alternative name(s):

Alpha-2 type I collagen

COL1A2 SNPs

    To see your genotype, you should be logged in and have a file with your genotype uploaded.

  1. RS115744676 (COL1A2) ??
  2. RS1801182 (COL1A2) ??
  3. RS3736638 (COL1A2) ??
  4. RS441051 (COL1A2) ??

Top Gene-Substance Interactions

COL1A2 Interacts with These Diseases

Disease Score

Substances That Increase COL1A2

Substances Interaction Organism Category

Substances That Decrease COL1A2

Substances Interaction Organism Category

Advanced Summary

     Ehlers-Danlos syndrome Several mutations in the COL1A2 gene can cause a form of Ehlers-Danlos syndrome known as the arthrochalasia type. Ehlers-Danlos syndrome is a group of disorders that affect the connective tissues that support the skin, bones, blood vessels, and many other organs and tissues. The arthrochalasia type is characterized by an unusually large range of joint movement (hypermobility) and dislocations of both hips at birth. The genetic changes, which affect one copy of the COL1A2 gene in each cell, lead to the production of a pro-α2(I) chain that is missing a critical segment. The absence of this segment interferes with the assembly and processing of pro-α2(I) chains into mature type I collagen molecules. These changes mainly affect tissues that are rich in type I collagen, such as the skin, bones, and tendons. Rarely, mutations in both copies of the COL1A2 gene in each cell have been reported in people with a form of Ehlers-Danlos syndrome described as the cardiac valvular type. This rare condition is characterized by abnormalities of the valves in the heart, highly stretchy (elastic) skin, and joint hypermobility. The mutations that cause this form of the disorder prevent cells from producing any normal pro-α2(I) chains. As a result, type I collagen fibrils in the skin and other tissues cannot be assembled correctly. The abnormal collagen weakens connective tissues, which causes the signs and symptoms of this condition. osteogenesis imperfecta Mutations in the COL1A2 gene occasionally cause osteogenesis imperfecta type I, the mildest form of this disorder. Most COL1A2 mutations, however, cause more severe forms of osteogenesis imperfecta, including types II, III, and IV. People with this condition have bones that break easily, often from mild trauma or with no apparent cause. Some COL1A2 mutations delete pieces of the gene, which leads to a pro-α2(I) chain that is missing critical regions. Other genetic changes alter the sequence of protein building blocks (amino acids) in the pro-α2(I) chain, usually replacing the amino acid glycine with a different amino acid. In some cases, amino acid substitutions alter one end of the protein chain (called the C-terminus), which interferes with the assembly of collagen molecules. These COL1A2 mutations prevent the normal production of type I collagen. When abnormal collagen is incorporated into developing bones and other connective tissues, it causes the serious medical problems associated with severe forms of osteogenesis imperfecta. other disorders People with certain COL1A2 mutations exhibit the signs and symptoms of both osteogenesis imperfecta and Ehlers-Danlos syndrome (described above). These mutations include duplications of a large part of the gene, deletions of an important segment of the pro-α2(I) chain, and genetic changes that result in an abnormally shortened version of the pro-α2(I) chain. Mutations in the COL1A2 gene alter the structure of type I collagen fibrils, which weakens connective tissue and leads to the characteristic features of these two conditions.

     The COL1A2 gene provides instructions for making part of a large molecule called type I collagen. Collagens are a family of proteins that strengthen and support many tissues in the body, including cartilage, bone, tendon, skin, and the white part of the eye (the sclera). Type I collagen is the most abundant form of collagen in the human body. A component of type I collagen called the pro-α2(I) chain is produced from the COL1A2 gene. Collagens begin as rope-like procollagen molecules that are each made up of three chains. Type I collagen is composed of two pro-α1(I) chains (which are produced from the COL1A1 gene) and one pro-α2(I) chain. The triple-stranded procollagen molecules are processed by enzymes outside the cell to create mature collagen. The collagen molecules then arrange themselves into long, thin fibrils that form stable interactions (cross-links) with one another in the spaces between cells. The cross-links result in the formation of very strong type I collagen fibers.

Conditions with Increased Gene Activity

Condition Change (log2fold) Comparison Species Experimental variables Experiment name

Conditions with Decreased Gene Activity

Condition Change (log2fold) Comparison Species Experimental variables Experiment name

Technical

The following transcription factors affect gene expression:

  • NF-kappaB
  • Egr-1
  • NF-kappaB1
  • C/EBPbeta
  • Sp1
  • IRF-1
  • p300

Tissue specificity:

Forms the fibrils of tendon, ligaments and bones. In bones the fibrils are mineralized with calcium hydroxyapatite.

Gene Pathways:

  • Hemostasis
  • Extracellular matrix organization
  • Amoebiasis
  • Protein digestion and absorption

Molecular Function:

  • Extracellular Matrix Structural Constituent
  • Identical Protein Binding
  • Metal Ion Binding
  • Platelet-Derived Growth Factor Binding
  • Protein Binding, Bridging

Biological Processes:

  • Blood Coagulation
  • Blood Vessel Development
  • Cellular Response To Amino Acid Stimulus
  • Collagen Catabolic Process
  • Collagen Fibril Organization
  • Extracellular Matrix Organization
  • Leukocyte Migration
  • Odontogenesis
  • Platelet Activation
  • Protein Heterotrimerization
  • Regulation Of Blood Pressure
  • Regulation Of Immune Response
  • Rho Protein Signal Transduction
  • Skeletal System Development
  • Skin Morphogenesis
  • Transforming Growth Factor Beta Receptor Signaling Pathway

Drug Bank:

  • Collagenase Clostridium Histolyticum
*synonyms

Synonyms/Aliases/Alternative Names of the Gene:

hypothetical protein| collagen, type I, alpha 1| alpha 1 type I collagen| alpha-2(1) collagen| alpha2(I)| alpha 2(I) collagen| alpha 2(I)-collagen| alpha 2(I) procollagen| alpha 2 type I collagen| alpha-2 type I collagen| alpha 2 type I procollagen| AS27_12170| AS28_06574| COL1A1| Col1a-2| COL1A2 gene exons 8 through 12| COLA| Cola2| Cola-2| collagen 1 alpha 2 chain| collagen a2| collagen a2(I)| collagen alpha-2| collagen alpha-2(I) chain| collagen alpha-2 type I chain| collagen COL1A2| collagen I alpha-2 polypeptide| collagen I, alpha-2 polypeptide| collagen of skin, tendon and bone, alpha-2 chain| collagen type 1 alpha 2| collagen, type 1, alpha 2| collagen type I alpha 2| collagen, type I, alpha 2| D623_10033782| H920_14701| M91_14202| N300_00975| N301_07724| N302_03085| N303_13968| N305_10935| N306_06579| N307_08892| N310_11189| N311_02628| N312_13604| N320_07980| N321_05265| N322_02874| N324_12315| N325_11963| N326_10523| N328_09402| N329_11291| N330_05213| N331_03778| N332_02412| N333_08285| N334_09618| N335_12689| N336_00671| N339_08969| N340_14916| N341_06622| oi4| oim| PANDA_006699| precollagen alpha-2| procollagen, type I, alpha 2| TREES_T100012336| type I collagen alpha 2 chain| type I procollagen| type I procollagen pro-alpha 2 chain| Y1Q_025370| Y956_11277| Z169_07236| zehn2357| col1a2

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